PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g19590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 274aa    MW: 30255.4 Da    PI: 8.4628
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g19590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019211233223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+ +Fs+   L++H ++ H
  CA10g19590 211 QCPQCSLRFSSVTALVSHVQKvH 233
                 7******************9988 PP

2zf-C2H216.22.9e-05245267223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+k F+++ +L+ H  + H
  CA10g19590 245 VCPRCSKGFRDPVSLVEHVEKeH 267
                 7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.04E-11457No hitNo description
PROSITE profilePS510397.6871059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.6E-101053IPR000058Zinc finger, AN1-type
SMARTSM001547.2E-51352IPR000058Zinc finger, AN1-type
PfamPF014283.1E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.1E-1090147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-993146No hitNo description
PROSITE profilePS510397.88498145IPR000058Zinc finger, AN1-type
SMARTSM001540.019101142IPR000058Zinc finger, AN1-type
PfamPF014282.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.011210233IPR015880Zinc finger, C2H2-like
PfamPF138946.8E-4211233No hitNo description
SuperFamilySSF576671.84E-5211263No hitNo description
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203244272IPR007087Zinc finger, C2H2
SMARTSM003557244267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGTPEFPNLG KHCFVDECRQ IDFLPFTCDC CHQVFCLEHR SYNRHNCPTA NKNDVSVVVC  60
PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVPGCREIL TFSNIIKCRE  120
CTIDHCLKHR FGPDHKCPGR KKPESSAFPF VNFRSGSRQA EPKKAPATSS SSWTSTFFKA  180
AEAGMAKLGS GRGQSSNATN HSGRASGQVE QCPQCSLRFS SVTALVSHVQ KVHEKNGVMN  240
LTVDVCPRCS KGFRDPVSLV EHVEKEHKGT SKA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543719.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-120SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1C6L80.0M1C6L8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000608870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-117C2H2 family protein